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2024
Piserchio A, Dalby KN and Ghose R 2024. Revealing eEF-2 kinase: recent structural insights into function. Trends Biochem. Sci. 49, 169-182.
2023
Piserchio A, Isiorho EA, Dalby KN and Ghose R 2023. Structure of the complex between calmodulin and a functional construct of eukaryotic elongation factor 2 kinase bound to an ATP-competitive inhibitor. J. Biol. Chem. 299, 104813. PDB: 8GM4, 8GM5 Piserchio A, Long KJ, Browning LS, Bohanon, AL, Isiorho EA, Dalby KN and Ghose R 2023. ADP enhances the allosteric activation of eukaryotic elongation factor 2 kinase by calmodulin. Proc. Natl. Acad. Sci. USA 120, e2300902120. PDB: 8FO6, 8FNY
Hajredini F, Alphonse S, and Ghose R 2023. BY-kinases: Protein tyrosine kinases like no other J. Biol. Chem. 299, 102737.
2022
Piserchio A, Isiroho EA, Long K, Bohanon AL, Kumar EA, Will N, Jeruzalmi D, Dalby KN, and Ghose R 2022. Structural Basis for the Calmodulin-mediated Activation of Eukaryotic Elongation Factor 2 Kinase. Science Adv. 8, eabo2039. PDB: 7SHQAlphonse S, Djemil I, Piserchio A and Ghose R 2022. Structural Basis for the Recognition of the Bacterial Tyrosine Kinase, Wzc by its Cognate Tyrosine Phosphatase, Wzb. Proc. Natl. Acad. Sci. USA 119, e2201800119.
2021
Hajredini F and Ghose R 2021. A conserved structural role for the Walker-A lysine in P-Loop containing kinases. Front. Mol. Biosci. 8, 747206.Hajredini F and Ghose R 2021. An ATPase with a twist: A unique mechanism underlies the activity of the bacterial tyrosine kinase, Wzc. Science Adv. 7, eabj5836.
Piserchio A, Long K, Lee K, Kumar EA, Abzalimov R, Dalby KN and Ghose R 2021. Structural dynamics of the complex of calmodulin with a minimal functional construct of eukaryotic elongation factor 2 kinase and the role of Thr348 autophosphorylation. Prot. Sci. 30, 1221-1234.
HIGHLIGHTED ARTICLE
Alphonse S, Banerjee A, Dantuluri S, Shuman S and Ghose R 2021. NMR solution structures of Runella slithyformis RNA 2'-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity. Nucl. Acids Res. 49, 9607-9624. PDB: 7KW8,7KW9
COVER FEATURE
2020
Hajredini F, Piserchio A and Ghose R 2020. Long-range dynamic correlations regulate the catalytic activity of the bacterial tyrosine kinase Wzc. Science Adv. 6, eabd3718.Stenzoski NE, Zou J, Piserchio A, Ghose R, Holehouse AS and Raleigh DP 2020. The Cold-Unfolded State is Expanded but Contains Long-and Medium-range Contacts and Is Poorly Described by Homopolymer Models. Biochemistry 59, 3290-3299.
Ghose R 2020. Keep a lid on it: A troika in kinase allostery. J. Biol. Chem. 295, 8492-8493.
2019
Kaoud T, Johnson W, Ebelt N, Piserchio A, Zamora-Olivares D, Ravenstein S, Pridgen J, Edupuganti R, Sammons R, Cano M, Warthaka M, Harger M, Tavares C, Park J, Radwan M, Ren P, Anslyn E, Tsai K, Ghose R and Dalby KN 2019. Modulating multi-functional ERK complexes by covalent targeting of a recruitment site in vivo. Nature Commun. 10, 5232.Lee K, Kumar EA, Dalby KN and Ghose R 2019. The Role of Calcium in the Interaction between Calmodulin and a Minimal Functional Construct of Eukaryotic Elongation Factor 2 Kinase. Prot. Sci. 28, 2089-2098.
Piserchio A, Will N, Giles DH, Hajredini F, Dalby KN and Ghose R 2019. Solution Structure of the Carboxy-terminal Tandem Repeat Domain of Eukaryotic Elongation Factor 2 Kinase and its Role in Substrate Recognition. J. Mol. Biol. 431, 2700-2717. PDB:6NX4
Sammons R, Ghose R, Tsai K and Dalby KN. 2019. Targeting ERK beyond the boundaries of the kinase active site in melanoma. Mol. Carcinogen. 58, 1551-1570.
COVER FEATURE
Sammons RM, Perry NA, Li Y, Cho EJ, Piserchio A, Zamora-Olivares DP, Ghose R, Kaoud TS, Debevec G, Bartholomeusz C, Gurevich VV, Iverson TM, Guilianotti M, Houghten RA and Dalby KN. 2019. A Novel Class of Common Docking Inhibitors that Prevent ERK2 Activation and Substrate Phosphorylation. ACS Chem. Biol. 14, 1183-1194.
Ghose R 2019. Nature of the Pre-Chemistry Ensemble in Mitogen-Activated Protein Kinases. J. Mol. Biol. 431, 145-157.
2018
- Alphonse S and Ghose R 2018. Methyl NMR Spectroscopy: Measurement of Dynamics in Viral RNA-directed RNA Polymerases. Methods, 148, 100-114.
Will N, Lee K, Hajredini F, Giles DH, Abzalimov RR, Clarkson M, Dalby KN and Ghose R 2018. Structural Dynamics of the Activation of Elongation Factor 2 Kinase by Ca2+-Calmodulin. J. Mol. Biol. 430, 2802-2821.
Alphonse S, Itin B, Khayat R and Ghose R 2018.Sequential Protein Expression and Capsid Assembly in Cell: Toward the Study of Multiprotein Viral Capsids Using Solid-State Nuclear Magnetic Resonance Techniques. Biochemistry, 57, 1568-1571.
Protein NMR - Methods and Protocols (ISBN 978-1-4939-7386-6).
2017
- Piserchio A, Warthaka M, Kaoud TS, Callaway K, Dalby KN and Ghose R 2017. Local destabilization, rigid-body and fuzzy docking facilitate the phosphorylation of Ets-1 by ERK2. Proc. Natl. Acad. Sci. USA. 114, E6287-E6296.
Reed BR, Yakovleva L, Shuman S and Ghose R 2017.Characterization of DNA binding by the isolated N-terminal domain of vaccinia virus DNA topoisomerase IB. Biochemistry. 56, 3307-3317.
Alphonse S and Ghose R 2017. Cystoviral RNA-directed RNA Polymerases: Regulation of RNA Synthesis on Multiple Time and Length Scales. Virus Res. 234, 135-152.
Ghose R 2017. Protein Structure and Interactions from Nuclear Magnetic Resonance Spectroscopy.In Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd.:Chichester. - Tavares CDJ, Giles DH, Stancu BG, Chitjian CA, Ferguson SB, Wellman RM, Kaoud TS, Ghose R and Dalby KN 2017. Signal integration at elongation factor 2 kinase; the roles of calcium, calmodulin and Ser-500 phosphorylation. J. Biol. Chem. 292, 2032-2045.
2016
- Will N, Piserchio A, Snyder I, Ferguson SB, Giles DH, Dalby KN and Ghose R 2016. Structure of the C-terminal Helical Repeat Domain of Eukaryotic Elongation Factor 2 Kinase. Biochemistry, 55, 5377-5386. PDB:KS5
Lee K, Alphonse S, Piserchio A, Tavares CDJ, Giles DH, Wellmann RM, Dalby KN and Ghose R 2016. Structural Basis for the Recognition of Eukaryotic Elongation Factor 2 Kinase by Calmodulin. Structure, 24, 1441-1451. PDB:5J8H
PREVIEW BY VEGLIA & LI
2015
- Alphonse S, Bhattacharya S, Wang H and Ghose R 2015. Methyl Relaxation Measurements Reveal Patterns of Fast Dynamics in a Viral RNA-Directed RNAPolymerase. Biochemistry, 54, 5828.
Piserchio A, Ramakrishan V, Wang H, Kaoud TS, Arshava B, Dutta K, Dalby K and Ghose R 2015. Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2. Sci. Rep. 5, 11127.
2014
- Alphonse S, Arnold JJ, Bhattacharya S, Wang H, Kloss B, Cameron CE and Ghose R 2014.Cystoviral Polymerase Complex Protein P7 Uses its Acidic C-terminal Tail to Regulate the RNA-directed RNA Polymerase P2. J. Mol. Biol. 426, 2580-2593.
Temel DB, Dutta K and Ghose R 2014. Sequence-specific 1H, 13C and 15N assignments of the catalytic domain of the Escherichia coli tyrosine kinase, Wzc. Biomolec. NMR Assignments. 8, 37-41.
2013
- Ren Z, Franklin MC and Ghose R 2013. Structure of the RNA-directed RNA polymerase from the cystovirus Φ12. Proteins: Struct. Func. Bioinform. 81, 1479-1484. PDB:4IEG; 4GZK
- Temel DB, Dutta K, Alphonse S, Nourikyan J, Grangegasse C and Ghose R. 2013. Regulatory interactions between a bacterial tyrosine kinase and its cognate phosphatase. J. Biol. Chem. 288, 15212-15228.
- Ghose R 2013. A measured approach: determining the PLCγ1 docking site on Itk using a biochemical ruler. J. Mol. Biol. 425, 679-682.
- Ghose R. 2013 Detection of Slow Dynamics Using Multiple-Quantum NMR Spectroscopy. In: Encyclopedia of Biophysics, Ed. Gordon Roberts, Springer Reference, Springer-Verlag, Berlin, Heidelberg.
2012
Piserchio A, Francis D, Koveal D, Dalby KN, Page R, Peti W and Ghose R 2012. Docking Interactions of Hematopoietic Tyrosine Phosphatase (HePTP) with the MAP Kinases ERK2 and p38α. Biochemistry, 51, 8047-8049.Piserchio A, Cowburn D and Ghose R 2012. Expression and Purification of Src-family KInases for Solution NMR Studies. Meth. Mol. Biol. 831, 111-131.
Piserchio A, Dalby K and Ghose R 2012. Assignment of Backbone Resonances in a Eukaryotic Protein Kinase - ERK2 as an Illustrative Example. Meth. Mol. Biol. 831, 359-368.
Natarajan A, Dutta K, Temel DB, Nair PA, Shuman S and Ghose R 2012. Solution structure and DNA-binding properties of the phosphoesterase domain of DNA ligase D. Nucl. Acids Res. 40, 2076-2088. PDB:2LJ6
2011
Piserchio A, Warthaka M, Devkota A, Kaoud TS, Lee S, Abramczyk O, Ren P, Dalby KN and Ghose R 2011. Solution NMR Insights into Docking Interactions Involving Inactive ERK2. Biochemistry 50, 3660-3772.Lee S, Warthaka M, Yan C, Kaoud TS, Piserchio A, Ghose R, Ren P and Dalby KN 2011. A Model of a MAPK-Substrate Complex in Active Conformation: A Computational and Experimental Approach. PLOS One 6, e15894.
Dutta K, Natarajan A, Nair P, Shuman S and Ghose R 2011. Sequence-specific 1H, 13C and 15N assignments of the phosphoesterase (PE) domain of Pseudomonas aeruginosa DNA ligase D (LigD). Biomolec. NMR Asgn. 5, 151-155.
Ren Z and Ghose R 2011. Slow Conformational Dynamics in the Cystoviral RNA-directed RNA Polymerase P2 – Influence of Substrate Nucleotides and Template RNA. Biochemistry 50, 1875-1884.
2010
Ferrage F, Riechel A, Bhattacharya S, Cowburn D and Ghose R 2010. On the measurement of 15N-{1H} nuclear Overhauser effects 2. Effects of the saturation scheme and water signal suppression. J. Magn. Reson. 207, 294-303.Ren Z, Wang H and Ghose R 2010. Dynamics on multiple timescales in the RNA-directed RNA polymerase from the cystovirus Φ6. Nucleic Acids Res. 38, 5105-5118.
Nicholas MP, Eryilmaz E, Ferrage F, Cowburn D and Ghose R 2010. Nuclear Spin Relaxation in isotropic and anisotropic media. Prog. NMR Spectroscopy 57, 111-158.
Greenbaum NL and Ghose R 2010. Nuclear magnetic resonance (NMR) spectroscopy:Structure determination of proteins and nucleic acids. In Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd.:Chichester.
Piserchio A, Nair P, Shuman S and Ghose R 2010. Solution NMR Studies of Chlorella Virus DNA Ligase-Adenylate. J. Mol. Biol. 395, 291-308.
2009
Piserchio A, Ghose R and Cowburn D 2009. Optimized Bacterial Expression and Purification of the c-Src Catalytic Domain for Solution NMR Studies. J. Biomol. NMR 44, 87-93.Ferrage F, Cowburn D and Ghose R 2009. Accurate Sampling of High-Frequency Motions in Proteins by Steady-State 15N-{1H} Nuclear Overhauser Effect Measurements in the Presence of Cross-Correlated Relaxation. J. Am. Chem. Soc. 131, 6048-6049.
Piserchio A, Nair P, Shuman S and Ghose R 2009. Sequence-specific 1HN, 13C and 15N backbone resonance assignments of the 34 kDa paramecium bursaria chlorella virus 1 (PBCV1) DNA ligase. Biomol. NMR Assign. 3, 77-80.
2008
Eryilmaz E, Benach J, Su M, Seetharaman J, Dutta K, Wei H, Gottlieb P, Hunt JF and Ghose R 2008. Structure and Dynamics of the P7 Protein from the Bacteriophage Φ12. J. Mol. Biol. 382, 402-422. PDB: 2Q82Ferrage F, Piserchio A, Cowburn D and Ghose R 2008. On the Measurement of 15N-{1H} Nuclear Overhauser Effects. J. Magn. Reson. 192, 302-313.
2007
Del Rio A, Dutta K, Chavez J, Ubarretxena-Belandia I and Ghose R 2007. Solution Structure and Dynamics of the N-terminal Cytosolic Domain of Rhomboid Intramembrane Protease from Pseudomonas aeruginosa: Insights into a Functional Role in Intramembrane Proteolysis. J. Mol. Biol. 365, 109-122. PDB: 2GQC
2006
Natarjan A, Ghose R and Hill JM. 2006 Structure and Dynamics of ASC2, a Pyrin Domain-only Protein that Regulates Inflammatory Signalling. J. Biol. Chem. 281, 31863-31875. PDB: 2HM2Ji H, Shekhtman A, Ghose R, McDonnell J and Cowburn D 2006. NMR determination that the BH3 motif of pro-apoptotic BID possesses extended specificity bound to BCL-XL. Magn. Reson. Chem. 44, S101-107.
Pujato M, Navarro A, Versace R, Mancusso R, Ghose R and Tasayco ML 2006. Do Carboxylate Sidechains and Backbone Amides of Asp and Glu Exhibit Similar pH-Dependence in Unfolded Proteins? BBA Proteins and Proteomics, 1764, 1227-1233.
Del Rio A, Anand A and Ghose R 2006. Detection of Correlated Dynamics on Multiple Timescales by Measurement of the Differential Relaxation of Zero- and Double-Quantum Coherences Involving Sidechain Methyl Groups in Proteins. J. Magn. Reson. 180, 1-17.
2005
Pradhan P, Ghose R and Green ME 2005. Voltage Gating and Anions, especially Phosphate: A Model System. BBA Biomembranes 1717, 97-103.
2004
Dutta K, Shi HH, Cruz-Chu ER, Kami K and Ghose R 2004 Dynamic Influences on a High-affinity, High-specificity Interaction Involving the C-terminal SH3 Domain of p67phox Biochemistry 43, 8094-8106Majumdar A and Ghose R 2004. Probing slow backbone dynamics in proteins using TROSY-based experiments to detect cross-correlated time-modulation of isotropic chemical shifts. J. Biomol. NMR 28, 213-227.
1993-2003
Shekhtman A, Ghose R, Goger MJ and Cowburn D 2002. NMR structure determination and investigation using a reduced proton (REDPRO) labeling strategy for proteins. FEBS Lett. 524, 177-182Shekhtman A, Ghose R, Cole PA and Cowburn D 2001. Novel mechanism of regulation of the non-receptor protein tyrosine kinase Csk : Insights from NMR mapping studies and site-directed mutagenesis. J. Mol. Biol. 314, 129-138.
COVER FEATURE
Ghose R, Shekhtman A, Goger MJ, Ji H and Cowburn D 2001. A novel, specific interaction involving the Csk SH3 domain and its natural ligand. Nature Struct. Biol. 8, 998-1004. PDB: 1JEG
Ghose R, Fushman D and Cowburn D 2001. Determination of the Rotational Diffusion Tensor of Macromolecules in Solution from NMR Relaxation Data with a Combination of Exact and Approximate Methods. J. Magn. Reson. 149, 204-217.
Fushman D, Ghose R and Cowburn D 2000. The Effect of Finite Sampling on the Determination of Orientational Properties: A Theoretical Treatment with Application to Interatomic Vectors in Proteins. J. Am. Chem. Soc. 122, 10640-10649.
Ghose R. 2000. Average Liouvillian Theory in Nuclear Magnetic Resonance - Principles, Properties and Applications. Concepts Magn. Reson. 12, 152-172.
Chiarparin E, Pelupessy P, Ghose R and Bodenhausen G. 2000. Relative Orientation of CαHα Bond Vectors of Successive Residues in Proteins through Cross-correlated Relaxation in NMR. J. Am. Chem. Soc. 122, 1758-1761.
Pelupessy P, Chiarparin E, Ghose R and Bodenhausen G. 1999. Simultaneous Determination of ψ and φ Angles in Proteins from Measurements of Cross-correlated Relaxation Effects. J. Biomol. NMR 14, 277-280.
Huang K, Ghose R, Flanagan JM and Prestegard JH. 1999. Backbone Dynamics of the N-terminal Domain in E. coli DnaJ determined by 15N and 13CO Relaxation Measurements. Biochemistry 38,10567-10577.
Chiarparin E, Pelupessy P, Ghose R and Bodenhausen G. 1999 Relaxation of Two-Spin Coherence due to Cross-Correlated Fluctuations of Dipole-Dipole Couplings and Anisotropic Shifts in NMR of 15N, 13C-labeled Biomolecules. J. Am. Chem. Soc. 121,6876-6883.
Cutting B, Ghose R and Bodenhausen, G 1999. Tilt Angle Dependence of Cross Relaxation in Off-Resonance ROESY. J. Magn. Reson. 138, 326-329.
Pelupessy P, Chiarparin E, Ghose R and Bodenhausen G 1999. Efficient Determination of Angles Subtended by Ca-Ha and N-H(N) Vectors in Proteins Via Dipole-Dipole Cross-correlation. J. Biomol. NMR 13, 375-380.
Ghose R, Eykyn, T and Bodenhausen G 1999. Average Liouvillian Theory Revisited : Cross Correlated Relaxation between Chemical Shift Anisotropy and Dipolar Couplings in the Rotating Frame in Nuclear Magnetic Resonance. Mol. Phys. 96, 1281-1288.
Eykyn TR, Ghose R and Bodenhausen G 1999. Offset Profiles of Selective Pulses in Isotopically Labeled Macromolecules. J. Magn. Reson. 136, 211-213.
Ghose R, Huang K and Prestegard JH. 1998. Measurement of Cross Correlation between Dipolar Coupling and Chemical Shift Anisotropy in the Spin Relaxation of 13C, 15N-Labeled Proteins. J. Magn. Reson. 135, 487-499.
Ghose R and Prestegard JH. 1998. Improved Estimation of CSA-Dipolar Coupling Cross-correlation Rates from Laboratory-frame Relaxation Experiments. J. Magn. Reson. 134, 308-314.
Ghose R and Prestegard JH. 1997. Electron Spin - Nuclear Spin Cross-correlation Effects on Multiplet Splittings in Paramagnetic Proteins. J. Magn. Reson. 128, 138-143.
Ghose R, Anderson CA and Prestegard JH. 1997. Origin of the Correlation Time Dependence of Coherence Transfer Distortions in Rotating Frame Cross-relaxation Spectra. J. Magn. Reson. 128, 207-216.
Ghose R, Geiger O and Prestegard JH. 1996. NMR Investigations of the Structural Properties of the Nodulation Protein, NodF, from Rhizobium leguminosarum and its Homology with the Escherichia coli Acyl Carrier Protein. FEBS Lett. 388, 66-72.
Salvatore BA, Ghose R and Prestegard JH. 1996. NMR Studies of a 13C, 15N-Labeled GM4 Lactam Glycolipid at an Oriented Model-Membrane Interface. J. Am. Chem. Soc. 118, 4001-4008.
Ghose R. , Marino JP, Wiberg KB and Prestegard JH. 1994. Dependence of 13C Chemical Shifts on Glycosidic Torsional Angles in Ribonucleic Acids. J. Am. Chem. Soc. 116, 8827-8828.